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Journal Articles

A Novel protein that recognizes DNA strand break

Narumi, Issei; Sato, Katsuya; Kikuchi, Masahiro

JAERI-Conf 2002-005, p.158 - 171, 2002/03

${it Deinococcus radiodurans}$ is characterized by its extraordinary resistance to the lethal and mutagenic effects of ionizing and ultraviolet irradiations and many other DNA-damaging agents. By analyzing a DNA repair-deficient mutant strain, we discovered that a novel protein participates in the extreme radiation resistance of ${it D. radiodurans}$. The protein (designated PprA for promoting prominent repair) can recognize DNA strand breaks. Further, PprA would protect irradiation-damaged DNA from exonuclease activity and consequent degradation and thereby ensure DNA repair processes could function. Beside DNA-binding ability, PprA can promote the activities of DNA ligase and RecA, suggesting that PprA functions as a DNA repair-promoting protein to potentiate the effectiveness of DNA repair. These properties enable PprA to use the widespread application ${it in vivo}$ and ${it in vitro}$.

Journal Articles

Recognition of DNA damage and induction of repair proteins in ${it Deinococcus radiodurans}$

Sato, Katsuya; Kikuchi, Masahiro; Narumi, Issei

JAERI-Conf 2002-005, p.172 - 184, 2002/03

${it Deinococcus radiodurans possesses}$ a DNA damage response mechanism. However, the damage response is poorly understood in ${it D. radiodurans}$. By investigating the function of deinococcal proteins, we found that, unlike in ${it E. coli}$, LexA is not involved in the regulation of RecA in ${it D. radiodurans}$. This, in turn, led us to speculate that ${it D. radiodurans}$ has an alternative DNA damage response mechanism with which to control ${it recA}$ expression. Recently, we discovered that a novel protein regulates the expression of ${it recA}$ gene. The novel regulatory protein (designated as PprI) also control the induction of ${it pprA}$ gene following $$gamma$$ irradiation. Thus, ${it D. radiodurans}$ possesses unique mechanisms of DNA damage recognition and repair gene induction.

Journal Articles

Visualization of DNA damage and its repair process in ${it Deinococcus radiodurans}$ by pulsed-field gel electrophoresis

Kikuchi, Masahiro; Narumi, Issei; Kobayashi, Yasuhiko

JAERI-Conf 2002-005, P. 185, 2002/03

The most striking feature of the radioresistant bacterium ${it D. radiodurans}$ is that it can mend over 100 double-strand breaks of genomic DNA during post-irradiation incubation. This process can be clearly visualized using pulsed-field gel electrophoresis (PFGE). By a combination of protein synthesis inhibition treatment and PFGE analysis, it was possible to estimate an initial period required for induction of DNA repair proteins (induction time) and a total period required for completing DNA repair (repair time). PFGE is a powerful tool to analyze DNA damage and its repair process.

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